stochTypes.h File Reference

Go to the source code of this file.

Namespaces
namespace	StochHMM
	traceback_path.h

Enumerations
enum	StochHMM::transType { StochHMM::STANDARD, StochHMM::DURATION, StochHMM::LEXICAL }
enum	StochHMM::tracebackIdentifier {   StochHMM::DIFF_STATE, StochHMM::STATE_NAME, StochHMM::STATE_LABEL, StochHMM::STATE_GFF,   StochHMM::START_INIT }
enum	StochHMM::combineIdentifier { StochHMM::FULL, StochHMM::STATENAME, StochHMM::STATELABEL, StochHMM::STATEGFF }
enum	StochHMM::trellisType { StochHMM::SIMPLE, StochHMM::STOCH, StochHMM::NTH }
enum	StochHMM::decodingType { StochHMM::VITERBI, StochHMM::FORWARD, StochHMM::POSTERIOR }
enum	StochHMM::trackType { StochHMM::UNDEFINED, StochHMM::ALPHA_NUM, StochHMM::REAL, StochHMM::EXTERNAL }
enum	StochHMM::unknownCharScoringType {   StochHMM::DEFINED_SCORE, StochHMM::AVERAGE_SCORE, StochHMM::LOWEST_SCORE, StochHMM::HIGHEST_SCORE,   StochHMM::NO_SCORE }
enum	StochHMM::valueType {   StochHMM::PROBABILITY, StochHMM::LOG_ODDS, StochHMM::COUNTS, StochHMM::LOG_PROB,   StochHMM::PERCENTAGE }

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Detailed Description

Definition in file stochTypes.h.