StochHMM  v0.34
Flexible Hidden Markov Model C++ Library and Application
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File List
Here is a list of all files with brief descriptions:
o*alignment.cpp
o*alignment.h
o*backward.cpp
o*baum_welch.cpp
o*bitwise_ops.cpp
o*bitwise_ops.h
o*CDF.cpp
o*CDF.h
o*Counter.cpp
o*Counter.h
o*distributions.cpp
o*distributions.h
o*dynamic_bitset.cpp
o*dynamic_bitset.h
o*emm.cpp
o*emm.h
o*externalFuncs.cpp
o*externalFuncs.hDefine additional function information for call to user function when calculating the emission or transition value At a state the function may be called and passed information. The function may need traceback data or other sequence data. Such options are defined by the externalFuncs class
o*externDefinitions.cpp
o*externDefinitions.h
o*forward.cpp
o*forward_viterbi.cpp
o*hmm.cpp
o*hmm.h
o*index.cpp
o*index.h
o*lexicalTable.cpp
o*lexicalTable.h
o*modelTemplate.cpp
o*modelTemplate.h
o*MotifScorer.cpp
o*MotifScorer.h
o*nth_best.cpp
o*options.cpp
o*options.h
o*output.cpp
o*output.h
o*PDF.cpp
o*PDF.h
o*posterior.cpp
o*pwm.cpp
o*pwm.h
o*seqJobs.cpp
o*seqTracks.cpp
o*seqTracks.h
o*sequence.cpp
o*sequence.h
o*sequences.cpp
o*sequences.h
o*sequenceStream.cpp
o*sequenceStream.h
o*simpleTable.h
o*sparseArray.h
o*state.cpp
o*state.h
o*stateInfo.h
o*statistics.cpp
o*statistics.h
o*stoch_forward.cpp
o*stoch_viterbi.cpp
o*StochHMM.cpp
o*StochHMM_usage.h
o*StochHMMlib.h
o*stochMath.cpp
o*stochMath.h
o*stochTable.cpp
o*stochTable.h
o*stochTypes.h
o*text.cpp
o*text.h
o*traceback_path.cpp
o*traceback_path.h
o*track.cpp
o*track.h
o*trainingSeq.cpp
o*trainingSeq.h
o*transitions.cpp
o*transitions.h
o*trellis.cpp
o*trellis.h
o*userFunctions.cpp
o*userFunctions.h
o*viterbi.cpp
o*weight.cpp
\*weight.h
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