trellis.h File Reference

#include <iostream>
#include <vector>
#include <stdint.h>
#include <string>
#include <fstream>
#include <bitset>
#include <map>
#include "stochTypes.h"
#include "sequences.h"
#include "hmm.h"
#include "traceback_path.h"
#include "stochMath.h"
#include <iomanip>
#include "stochTable.h"
#include "sparseArray.h"

Go to the source code of this file.

Classes
class	StochHMM::nthScore
class	StochHMM::nthTrace
class	StochHMM::trellis

Namespaces
namespace	StochHMM
	traceback_path.h

Typedefs
typedef std::vector < std::vector< int16_t > >	StochHMM::int_2D
typedef std::vector < std::vector< float > >	StochHMM::float_2D
typedef std::vector < std::vector< double > >	StochHMM::double_2D
typedef std::vector < std::vector< long double > >	StochHMM::long_double_2D
typedef std::vector < std::vector< std::vector < uint16_t > > >	StochHMM::int_3D
typedef std::vector < std::vector< std::vector < float > > >	StochHMM::float_3D
typedef std::vector < std::vector< std::vector < double > > >	StochHMM::double_3D
typedef std::vector < std::vector< std::vector < long double > > >	StochHMM::long_double_3D

Functions
void	StochHMM::sort_scores (std::vector< nthScore > &nth_scores)
	Sort the viterbi scores in the nth trellis cells.
bool	StochHMM::_vec_sort (const nthScore &i, const nthScore &j)