StochHMM::Counter Member List

This is the complete list of members for StochHMM::Counter, including all inherited members.

_count(sequence &, std::vector< lexicalTable * > &)	StochHMM::Counter
clear()	StochHMM::Counter
Counter()	StochHMM::Counter
Counter(int, int, int, int, int)	StochHMM::Counter
Counter(int, int, int, int)	StochHMM::Counter
Counter(int, int, int)	StochHMM::Counter
Counter(int)	StochHMM::Counter
Counter(sequence &, countType, track *, int, int, int, int, int)	StochHMM::Counter
Counter(track *, int, int, int, int, int)	StochHMM::Counter
Counter(track *, int, int, int, int)	StochHMM::Counter
Counter(track *, int, int, int)	StochHMM::Counter
Counter(track *, int)	StochHMM::Counter
Counter(std::vector< sequence * > &, countType, track *, int, int, int, int, int)	StochHMM::Counter
Counter(sequenceStream &, countType, track *, int, int, int, int, int)	StochHMM::Counter
countGeneral(sequence &, int, int)	StochHMM::Counter
countGeneral(std::vector< sequence * > &, int, int)	StochHMM::Counter
countGeneral(sequenceStream &, int, int)	StochHMM::Counter
countMask(sequence &, int, int)	StochHMM::Counter
countMask(std::vector< sequence * > &, int, int)	StochHMM::Counter
countPeriodic(sequence &, int, int)	StochHMM::Counter
countPeriodic(std::vector< sequence * > &, int, int)	StochHMM::Counter
countPeriodic(sequenceStream &, int, int)	StochHMM::Counter
countPWM(sequence &, int, int)	StochHMM::Counter
countPWM(std::vector< sequence * > &, int, int)	StochHMM::Counter
countPWM(sequenceStream &, int, int)	StochHMM::Counter
downstream	StochHMM::Counter	private
initializeTable(size_t)	StochHMM::Counter	private
lengthOfAllSequences	StochHMM::Counter	private
order	StochHMM::Counter	private
period	StochHMM::Counter	private
printTable()	StochHMM::Counter
pseudoCount	StochHMM::Counter	private
seqLength	StochHMM::Counter	private
seqtrk	StochHMM::Counter	private
sequencesCounted	StochHMM::Counter	private
setOrder(size_t)	StochHMM::Counter
setPeriod(size_t)	StochHMM::Counter
setPseudoCount(size_t)	StochHMM::Counter
setTrack(track *)	StochHMM::Counter
tables	StochHMM::Counter	private
type	StochHMM::Counter	private
upstream	StochHMM::Counter	private
variableSet	StochHMM::Counter	private