Here is a list of all class members with links to the classes they belong to:

- _ -

• _addStateToFromTransition() : StochHMM::model
• _checkTopology() : StochHMM::model
• _close() : StochHMM::seqTracks
• _count() : StochHMM::Counter
• _digitize() : StochHMM::sequence
• _finalizeTransitions() : StochHMM::PWM , StochHMM::state
• _getGapScore() : StochHMM::alignment
• _getOrderedPositionNames() : StochHMM::PWM
• _getOrderedStateNames() : StochHMM::model
• _init() : StochHMM::seqTracks
• _initImportTrackInfo() : StochHMM::seqTracks
• _initTrellis() : StochHMM::alignment
• _loadFASTA() : StochHMM::seqTracks
• _loadFASTQ() : StochHMM::seqTracks
• _loadMultivariatePdf() : StochHMM::StateFuncs
• _loadUnivariatePdf() : StochHMM::StateFuncs
• _open() : StochHMM::seqTracks
• _parseAbsDef() : StochHMM::ExDefSequence
• _parseAmbiguous() : StochHMM::model , StochHMM::PWM
• _parseBackground() : StochHMM::PWM
• _parseDuration() : StochHMM::transition
• _parseEmission() : StochHMM::state
• _parseHeader() : StochHMM::model , StochHMM::state
• _parseLexical() : StochHMM::transition
• _parsePositions() : StochHMM::PWM
• _parseScaling() : StochHMM::model
• _parseSpacer() : StochHMM::PWM
• _parseStandard() : StochHMM::transition
• _parseStates() : StochHMM::model
• _parseTemplates() : StochHMM::model
• _parseThreshold() : StochHMM::PWM
• _parseTrack() : StochHMM::PWM
• _parseTracks() : StochHMM::model
• _parseTransition() : StochHMM::state
• _parseWeightDef() : StochHMM::ExDefSequence
• _processTags() : StochHMM::transition , StochHMM::emm
• _processTemplateState() : StochHMM::model
• _reset() : StochHMM::alignment , StochHMM::seqTracks
• _resetSeqs() : StochHMM::alignment
• _splitAmbiguousList() : StochHMM::track
• _splitIndividual() : StochHMM::stringList
• _splitPositions() : StochHMM::PWM
• _splitStates() : StochHMM::model
• _stringifyAmbig() : StochHMM::model
• _stringifyHeader() : StochHMM::model
• _stringifyScaling() : StochHMM::model
• _stringifyStates() : StochHMM::model
• _stringifyTracks() : StochHMM::model