Here is a list of all class members with links to the classes they belong to:

- t -

• table : StochHMM::alt_simple_stochTable , StochHMM::multiTraceback
• tables : StochHMM::Counter
• tagFunc : StochHMM::emm
• target : StochHMM::alignment
• tb : StochHMM::nthTrace
• templatedStates : StochHMM::model
• templates() : StochHMM::templates
• temps : StochHMM::templates
• test() : StochHMM::dynamic_bitset
• threshold : StochHMM::matrixPosition
• thresholdSet : StochHMM::matrixPosition
• to : StochHMM::state
• toState : StochHMM::transition
• toVecDouble() : StochHMM::stringList
• toVecInt() : StochHMM::stringList
• tr : StochHMM::alignment
• trace_path : StochHMM::traceback_path
• traceback : StochHMM::cell , StochHMM::alignment , StochHMM::stochTable , StochHMM::alt_simple_stochTable , StochHMM::trellis
• traceback_identifier : StochHMM::transition
• traceback_nth() : StochHMM::trellis
• traceback_nth_viterbi() : StochHMM::trellis
• traceback_path() : StochHMM::traceback_path
• traceback_posterior() : StochHMM::trellis
• traceback_stoch_posterior() : StochHMM::trellis
• traceback_string : StochHMM::transition
• traceback_table : StochHMM::trellis
• track() : StochHMM::track
• track_indices : StochHMM::emm
• track_size() : StochHMM::model
• trackCount : StochHMM::seqTracks
• trackFunction : StochHMM::track
• trackFunctionDefined : StochHMM::track
• trackFunctions : StochHMM::seqTracks
• trackIndex : StochHMM::track
• trackName : StochHMM::transitionFuncParam , StochHMM::emissionFuncParam
• trackNumber : StochHMM::emissionFuncParam , StochHMM::ppTrack
• tracks : StochHMM::track
• trackSize() : StochHMM::lexicalTable
• trackToUse : StochHMM::ppTrack , StochHMM::track
• TrackToUseForAttrib : StochHMM::seqTracks
• transferValues() : StochHMM::lexicalTable
• transFunc : StochHMM::transitionFuncParam
• transFuncCombineIdentifier : StochHMM::transitionFuncParam
• transFuncCombineString : StochHMM::transitionFuncParam
• transFuncName : StochHMM::transitionFuncParam
• transFuncScaling : StochHMM::transitionFuncParam
• transFuncTraceback : StochHMM::transitionFuncParam
• transFuncTracebackIdentifier : StochHMM::transitionFuncParam
• transFuncTracebackString : StochHMM::transitionFuncParam
• transFuncTrack : StochHMM::transitionFuncParam
• transi : StochHMM::state
• transition() : StochHMM::transition
• transition_names : StochHMM::matrixPosition
• transition_type : StochHMM::transition
• transitionFuncParam() : StochHMM::transitionFuncParam
• transitionFunctions : StochHMM::StateFuncs
• transitionFuncTraceback() : StochHMM::trellis
• transitions : StochHMM::matrixPosition
• transitionsSize() : StochHMM::matrixPosition
• trcks : StochHMM::emm , StochHMM::lexicalTable , StochHMM::model
• trellis() : StochHMM::trellis , StochHMM::alignment , StochHMM::trellis
• trk : StochHMM::PWM
• trks : StochHMM::tracks
• type : StochHMM::trellis , StochHMM::Counter , StochHMM::opt_parameters , StochHMM::opt_data