Here is a list of all class members with links to the classes they belong to:

- c -

• calc_pvalue() : StochHMM::alignment
• calcLambda() : StochHMM::alignment
• calculateArrayIndex() : StochHMM::lexicalTable
• calculateBack() : StochHMM::PWM
• calculateIndexFromDecomposed() : StochHMM::lexicalTable
• cell() : StochHMM::cell
• charIndices : StochHMM::track
• checkBasicModel() : StochHMM::model
• checkExplicitDurationStates() : StochHMM::model
• checkLabels() : StochHMM::state
• CheckParameter() : StochHMM::stencil
• checkTopology() : StochHMM::model
• clear() : StochHMM::sequence , StochHMM::simpleTable< T > , StochHMM::sparseArray< T > , StochHMM::stringList , StochHMM::traceback_path , StochHMM::multiTraceback , StochHMM::Counter , StochHMM::dynamic_bitset
• command : StochHMM::model
• commandline_tag : StochHMM::opt_parameters
• comment : StochHMM::stringList
• complement : StochHMM::emm , StochHMM::sequence
• complementAlphabet : StochHMM::track
• complementSet : StochHMM::track
• complex_emission_states : StochHMM::model
• complex_emissions : StochHMM::trellis
• complex_transition_states : StochHMM::model
• complex_transitions : StochHMM::trellis
• contains() : StochHMM::stringList
• containsExact() : StochHMM::stringList
• continuous : StochHMM::emm
• convertIndex() : StochHMM::lexicalTable
• convertIndexToDigital() : StochHMM::track
• convertIndexToWord() : StochHMM::track
• count() : StochHMM::dynamic_bitset , StochHMM::weights
• count_before() : StochHMM::dynamic_bitset
• Counter() : StochHMM::Counter
• countGeneral() : StochHMM::Counter
• countMask() : StochHMM::Counter
• countPeriodic() : StochHMM::Counter
• countPWM() : StochHMM::Counter
• counts : StochHMM::lexicalTable , StochHMM::multiTraceback
• createTable() : StochHMM::lexicalTable
• current_size : StochHMM::dynamic_bitset
• currentThreshold : StochHMM::PWM