StochHMM::weights Class Reference

#include <weight.h>

List of all members.

Public Member Functions
void	addWeight (weight *)
weight *	operator[] (std::string &)
size_t	count (std::string &name)
void	print ()
std::string	stringify ()

Private Attributes
std::map< std::string, weight * >	wts

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Detailed Description

Weights class keeps track of multiple weight types *Each weight can be indexed by a name

Definition at line 160 of file weight.h.

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Member Function Documentation

void StochHMM::weights::addWeight

(

weight *

wt

)

Definition at line 418 of file weight.cpp.

References StochHMM::weight::getName(), and wts.

Referenced by StochHMM::model::_parseScaling().

                                     {
        
        std::string& name=wt->getName();
        if (!wts.count(name)){
            wts[name]=wt;
            return;
        }
        else{
            std::cerr << "Weight of name: " << name << " already exists and is duplicated.  Please remove duplicates.\n";
            exit(1);
        }
    }

size_t StochHMM::weights::count ( std::string &  name )

inline

Definition at line 168 of file weight.h.

References wts.

Referenced by StochHMM::transitionFuncParam::parse(), and StochHMM::emissionFuncParam::parse().

{return wts.count(name);};

weight * StochHMM::weights::operator[]

(

std::string &

name

)

Definition at line 431 of file weight.cpp.

References wts.

                                              {
        if (wts.count(name)){
            return wts[name];
        }
        else{
            return NULL;
        }
    }

void StochHMM::weights::print

(

)

Definition at line 440 of file weight.cpp.

References stringify().

                       {
        std::cout << stringify() << std::endl;
    }

std::string StochHMM::weights::stringify

(

)

Definition at line 444 of file weight.cpp.

References wts.

Referenced by StochHMM::model::_stringifyScaling(), and print().

                                {
        std::string weightString;
        std::string lnSep(50,'=');
        
        weightString+= "SCALING FUNCTIONS\n" + lnSep + "\n";
        std::map<std::string,weight*>::iterator it;
        for(it=wts.begin();it!=wts.end();it++){
            weightString+="SCALE:\t" + (*it).first + "\n";
            weightString+=(*it).second->stringify();
        }
        
        weightString+="\n";
        return weightString;
        
    }

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Member Data Documentation

std::map<std::string, weight*> StochHMM::weights::wts

private

Definition at line 174 of file weight.h.

Referenced by addWeight(), count(), operator[](), and stringify().

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The documentation for this class was generated from the following files:

• weight.h
• weight.cpp