Here is a list of all class members with links to the classes they belong to:

- f -

• fast_complex_backward() : StochHMM::trellis
• fast_complex_baum_welch() : StochHMM::trellis
• fast_complex_stochastic_forward() : StochHMM::trellis
• fast_complex_stochastic_viterbi() : StochHMM::trellis
• fast_complex_viterbi() : StochHMM::trellis
• feature : StochHMM::gff_feature
• fileCount() : trainingSeqs
• filehandles : StochHMM::seqTracks
• fileType : StochHMM::seqTracks
• finalize() : StochHMM::stochTable , StochHMM::alt_simple_stochTable , StochHMM::multiTraceback , StochHMM::model
• finalized : StochHMM::model
• find_first() : StochHMM::dynamic_bitset
• find_last() : StochHMM::dynamic_bitset
• flag : StochHMM::sparseArray< T >
• flags : StochHMM::opt_data
• flip() : StochHMM::dynamic_bitset::bit_ref , StochHMM::dynamic_bitset
• forward() : StochHMM::trellis
• forward_score : StochHMM::trellis
• foundAlphaDelimiter() : StochHMM::stringList
• fprint_path() : StochHMM::traceback_path
• frame : StochHMM::gff_feature
• from : StochHMM::state
• fromAlpha() : StochHMM::stringList
• fromDef() : StochHMM::stringList
• fromNext() : StochHMM::stringList
• fromTable() : StochHMM::stringList
• fromTrack() : StochHMM::stringList
• fromTxt() : StochHMM::stringList
• frontWeightMatrix : StochHMM::PWM
• frontWeightName : StochHMM::PWM
• func : StochHMM::ppTrack , StochHMM::transition
• funcEvaluated : StochHMM::seqJob
• function : StochHMM::transition , StochHMM::emm
• FunctionDefined() : StochHMM::transition
• functions : StochHMM::TrackFuncs , StochHMM::seqJob