Here is a list of all class members with links to the classes they belong to:

- a -

• absolute : StochHMM::ExDef , StochHMM::weight
• absoluteValue : StochHMM::weight
• addAlphabetChar() : StochHMM::track
• addAmbiguous() : StochHMM::track
• addComplement() : StochHMM::track
• addEmission() : StochHMM::state
• addFromState() : StochHMM::state
• addModel() : StochHMM::models
• addSeq() : StochHMM::sequences
• addState() : StochHMM::model
• addTemplate() : StochHMM::templates
• addToState() : StochHMM::state
• addTrack() : StochHMM::model , StochHMM::lexicalTable
• addTransition() : StochHMM::matrixPosition , StochHMM::state
• addWeight() : StochHMM::weights
• align() : StochHMM::alignment
• alignment() : StochHMM::alignment
• allowable : StochHMM::opt_parameters
• alpha : StochHMM::simpleTable< T >
• alpha_type : StochHMM::track
• alphabet : StochHMM::track
• alphabets : StochHMM::lexicalTable
• alphaIndex : trainingSeqs
• alt_scoring_current : StochHMM::trellis
• alt_scoring_previous : StochHMM::trellis
• alt_simple_stochastic_table : StochHMM::trellis
• alt_simple_stochTable() : StochHMM::alt_simple_stochTable
• alternatives : StochHMM::options
• amb : StochHMM::Index
• ambigCharacter() : StochHMM::ambigCharacter
• ambiguous : StochHMM::Index , StochHMM::track
• ambiguousSymbols : StochHMM::track
• any() : StochHMM::dynamic_bitset
• array : StochHMM::sparseArray< T > , StochHMM::dynamic_bitset
• array_size : StochHMM::lexicalTable
• assign() : StochHMM::nthTrace , StochHMM::simpleTable< T > , StochHMM::multiTraceback
• assignEmissionFunction() : StochHMM::StateFuncs
• assignFunction() : StochHMM::TrackFuncs
• assignMultivariatePdfFunction() : StochHMM::StateFuncs
• assignPDFFunction() : StochHMM::StateFuncs
• assignTable() : StochHMM::lexicalTable
• assignTransitionFunction() : StochHMM::StateFuncs
• assignWeight() : StochHMM::ExDef , StochHMM::weightDef
• at() : StochHMM::dynamic_bitset , StochHMM::sparseArray< T >
• attrib : StochHMM::seqJob , StochHMM::sequence
• attribModelFunc : StochHMM::seqTracks
• attribTwo : StochHMM::model
• attribute : StochHMM::gff_feature
• author : StochHMM::model