#include <externDefinitions.h>

Inheritance diagram for StochHMM::ExDef:

Public Member Functions
	ExDef ()
virtual	~ExDef ()
size_t	getState ()
bool	isAbsolute ()
void	setState (size_t stIter)
virtual void	assignWeight (size_t stateIter, double val)
virtual double	getWeight (size_t stateIter)
virtual std::string	stringify ()
	Get the string representation of the ExDef.

Protected Attributes
bool	absolute
size_t	weightedState

Friends
class	ExDefSequence

Detailed Description

ExDef defines absolute external definition for model. The model must pass through this state

Definition at line 105 of file externDefinitions.h.

Constructor & Destructor Documentation

StochHMM::ExDef::ExDef ( )

Create a ExDef type *Default: absolute=false, weightedState = -2

Definition at line 123 of file externDefinitions.cpp.

References absolute, and weightedState.

                {
        absolute=false;
        weightedState=-2;
        //st=NULL;
    }

virtual StochHMM::ExDef::~ExDef ( )

inlinevirtual

Definition at line 111 of file externDefinitions.h.

{};

Member Function Documentation

virtual void StochHMM::ExDef::assignWeight	(	size_t	stateIter,
		double	val
	)

inlinevirtual

Reimplemented in StochHMM::weightDef.

Definition at line 119 of file externDefinitions.h.

References absolute, and weightedState.

{weightedState=stateIter;absolute=true;};

size_t StochHMM::ExDef::getState ( )

inline

Definition at line 115 of file externDefinitions.h.

References weightedState.

{return weightedState;};

virtual double StochHMM::ExDef::getWeight ( size_t stateIter )

inlinevirtual

Reimplemented in StochHMM::weightDef.

Definition at line 120 of file externDefinitions.h.

References weightedState.

{if ( stateIter == weightedState){ return 0;} else { return -INFINITY;}};

bool StochHMM::ExDef::isAbsolute ( )

inline

Definition at line 116 of file externDefinitions.h.

References absolute.

{return absolute;};

void StochHMM::ExDef::setState ( size_t stIter )

inline

Definition at line 118 of file externDefinitions.h.

References absolute, and weightedState.

{absolute=true; weightedState=stIter;};

std::string StochHMM::ExDef::stringify ( )

virtual

Get the string representation of the ExDef.

Reimplemented in StochHMM::weightDef.

Definition at line 154 of file externDefinitions.cpp.

References StochHMM::int_to_string(), and weightedState.

                              {
        
        std::string output;
        output+="STATE: ";
        output+= int_to_string(weightedState) + "\n";
        return output;
    }