StochHMM::weightDef Class Reference

#include <externDefinitions.h>

Inheritance diagram for StochHMM::weightDef:

List of all members.

Public Member Functions
	weightDef (size_t)
	Create a weightDef type.
	~weightDef ()
double	getWeight (size_t stateIter)
void	assignWeight (size_t, double)
std::string	stringify ()
	Get the string representation of the weightDef.
Public Member Functions inherited from StochHMM::ExDef
	ExDef ()
virtual	~ExDef ()
size_t	getState ()
bool	isAbsolute ()
void	setState (size_t stIter)

Private Attributes
sparseArray< double >	weights

Friends
class	ExDefSequence

Additional Inherited Members
Protected Attributes inherited from StochHMM::ExDef
bool	absolute
size_t	weightedState

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Detailed Description

weightDef defines weighted external definitions. Model weights the states at the position with a value

Definition at line 132 of file externDefinitions.h.

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Constructor & Destructor Documentation

StochHMM::weightDef::weightDef

(

size_t

state_size

)

Create a weightDef type.

Definition at line 130 of file externDefinitions.cpp.

References StochHMM::ExDef::absolute, SIZE_MAX, and StochHMM::ExDef::weightedState.

                                         :ExDef(), weights(state_size){
        absolute=false;
        weightedState=SIZE_MAX;
                //weights.assign(state_size, 0);
        //st=NULL;
    }

StochHMM::weightDef::~weightDef ( )

inline

Definition at line 136 of file externDefinitions.h.

{};

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Member Function Documentation

void StochHMM::weightDef::assignWeight ( size_t  stateIter, double  logValue  )

virtual

Assign a weight to a particular state

Parameters:

stateIter	integer Iterator to the state
logValue	Log value of weight to apply

Reimplemented from StochHMM::ExDef.

Definition at line 140 of file externDefinitions.cpp.

                                                                 {
                if (!weights.defined(stateIter)){
                        weights[stateIter] = logValue;
                }
                else{
                        weights[stateIter]+=logValue;
                }
        
        return;
    }

double StochHMM::weightDef::getWeight ( size_t  stateIter )

inlinevirtual

Reimplemented from StochHMM::ExDef.

Definition at line 140 of file externDefinitions.h.

                                                 {
                        if (weights.defined(stateIter)){
                                return weights[stateIter];
                        }
                        return 0;
                };

std::string StochHMM::weightDef::stringify ( )

virtual

Get the string representation of the weightDef.

Reimplemented from StochHMM::ExDef.

Definition at line 164 of file externDefinitions.cpp.

References StochHMM::double_to_string(), and StochHMM::int_to_string().

                                  {
        std::string test;
        
        test+="STATES: ";
        
        for(size_t i=0;i<weights.size();i++){
            if (weights[i]!=0.0){
                test+= "\t" + int_to_string(i) + "\t" + double_to_string(weights[i]) + "\n";
            }
        }
        return test;
    }

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Friends And Related Function Documentation

friend class ExDefSequence

friend

Reimplemented from StochHMM::ExDef.

Definition at line 136 of file externDefinitions.h.

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Member Data Documentation

sparseArray<double> StochHMM::weightDef::weights

private

Definition at line 150 of file externDefinitions.h.

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The documentation for this class was generated from the following files:

• externDefinitions.h
• externDefinitions.cpp