StochHMM::cell Class Reference

#include <alignment.h>

List of all members.

Public Member Functions
	cell ()
void	setTraceback (tracebackDirection dir)
void	setScore (double value)
void	setDiag (double value)
void	setLeft (double value)
void	setUp (double value)
double	getScore ()
tracebackDirection	getTraceback ()

Private Attributes
tracebackDirection	traceback
double	score
std::vector< double >	scores

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Detailed Description

Definition at line 28 of file alignment.h.

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Constructor & Destructor Documentation

StochHMM::cell::cell

(

)

Definition at line 14 of file alignment.cpp.

References scores.

              :traceback(NONE),score(0.0){
        scores.insert(scores.begin(),3,0.0);
    }

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Member Function Documentation

double StochHMM::cell::getScore ( )

inline

Definition at line 36 of file alignment.h.

References score.

{return score;}

tracebackDirection StochHMM::cell::getTraceback ( )

inline

Definition at line 37 of file alignment.h.

References traceback.

{return traceback;}

void StochHMM::cell::setDiag ( double  value )

inline

Definition at line 33 of file alignment.h.

References scores.

Referenced by StochHMM::alignment::_initTrellis().

{scores[0]=value;}

void StochHMM::cell::setLeft ( double  value )

inline

Definition at line 34 of file alignment.h.

References scores.

Referenced by StochHMM::alignment::_initTrellis().

{scores[1]=value;}

void StochHMM::cell::setScore ( double  value )

inline

Definition at line 32 of file alignment.h.

References score.

Referenced by StochHMM::alignment::_initTrellis().

{score=value;}

void StochHMM::cell::setTraceback ( tracebackDirection  dir )

inline

Definition at line 31 of file alignment.h.

References traceback.

Referenced by StochHMM::alignment::_initTrellis().

{traceback = dir;}

void StochHMM::cell::setUp ( double  value )

inline

Definition at line 35 of file alignment.h.

References scores.

Referenced by StochHMM::alignment::_initTrellis().

{scores[2]=value;}

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Member Data Documentation

double StochHMM::cell::score

private

Definition at line 40 of file alignment.h.

Referenced by getScore(), and setScore().

std::vector<double> StochHMM::cell::scores

private

Definition at line 41 of file alignment.h.

Referenced by cell(), setDiag(), setLeft(), and setUp().

tracebackDirection StochHMM::cell::traceback

private

Definition at line 39 of file alignment.h.

Referenced by getTraceback(), and setTraceback().

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The documentation for this class was generated from the following files:

• alignment.h
• alignment.cpp