| _addStateToFromTransition(state *) | StochHMM::model | private |
| _checkTopology(state *st, std::vector< uint16_t > &visited) | StochHMM::model | private |
| _getOrderedStateNames(stringList &, stringList &) | StochHMM::model | private |
| _parseAmbiguous(std::string &) | StochHMM::model | private |
| _parseHeader(std::string &) | StochHMM::model | private |
| _parseScaling(std::string &) | StochHMM::model | private |
| _parseStates(std::string &, StateFuncs *) | StochHMM::model | private |
| _parseTemplates(std::string &) | StochHMM::model | private |
| _parseTracks(std::string &) | StochHMM::model | private |
| _processTemplateState(std::string &, stringList &) | StochHMM::model | private |
| _splitStates(std::string &, stringList &) | StochHMM::model | private |
| _stringifyAmbig() | StochHMM::model | private |
| _stringifyHeader() | StochHMM::model | private |
| _stringifyScaling() | StochHMM::model | private |
| _stringifyStates() | StochHMM::model | private |
| _stringifyTracks() | StochHMM::model | private |
| addState(state *) | StochHMM::model | |
| addTrack(track *trk) | StochHMM::model | inline |
| attribTwo | StochHMM::model | private |
| author | StochHMM::model | private |
| basicModel | StochHMM::model | private |
| checkBasicModel() | StochHMM::model | private |
| checkExplicitDurationStates() | StochHMM::model | private |
| checkTopology() | StochHMM::model | |
| command | StochHMM::model | private |
| complex_emission_states | StochHMM::model | private |
| complex_transition_states | StochHMM::model | private |
| date | StochHMM::model | private |
| desc | StochHMM::model | private |
| ending | StochHMM::model | private |
| explicit_duration_states | StochHMM::model | private |
| finalize() | StochHMM::model | |
| finalized | StochHMM::model | private |
| get_explicit() | StochHMM::model | inline |
| getAuthor() | StochHMM::model | inline |
| getCommand() | StochHMM::model | inline |
| getDate() | StochHMM::model | inline |
| getDescription() | StochHMM::model | inline |
| getDistanceToAttrib(double) | StochHMM::model | |
| getEnding() | StochHMM::model | inline |
| getEndingFrom() | StochHMM::model | inline |
| getInitial() | StochHMM::model | inline |
| getInitialTo() | StochHMM::model | inline |
| getName() | StochHMM::model | inline |
| getScalingFactor(std::string &) | StochHMM::model | |
| getState(size_t iter) | StochHMM::model | inline |
| getState(const std::string &) | StochHMM::model | |
| getStateGFF(size_t iter) | StochHMM::model | inline |
| getStateInfo() | StochHMM::model | inline |
| getStateLabel(size_t iter) | StochHMM::model | inline |
| getStateName(size_t iter) | StochHMM::model | inline |
| getStateXFrom(size_t iter) | StochHMM::model | inline |
| getStateXTo(size_t iter) | StochHMM::model | inline |
| getTrack(size_t iter) | StochHMM::model | inline |
| getTrack(const std::string &) | StochHMM::model | |
| getTrackIter(const std::string &txt) | StochHMM::model | inline |
| getTracks() | StochHMM::model | inline |
| hasComplexEmission() | StochHMM::model | inline |
| import(std::string &, StateFuncs *) | StochHMM::model | |
| import(std::string &) | StochHMM::model | |
| import(std::string &, StateFuncs *, templates *, weights *) | StochHMM::model | |
| importFromString(std::string &) | StochHMM::model | |
| importFromString(std::string &, StateFuncs *) | StochHMM::model | |
| importFromString(std::string &, StateFuncs *, templates *, weights *) | StochHMM::model | |
| info | StochHMM::model | private |
| initial | StochHMM::model | private |
| isBasic() | StochHMM::model | inline |
| model() | StochHMM::model | |
| name | StochHMM::model | private |
| operator[](size_t iter) | StochHMM::model | inline |
| parse(const std::string &, StateFuncs *, templates *, weights *) | StochHMM::model | |
| parse(std::string &, std::string &) | StochHMM::model | |
| print() | StochHMM::model | |
| range | StochHMM::model | private |
| scaling | StochHMM::model | private |
| setAuthor(std::string &txt) | StochHMM::model | inline |
| setCommand(std::string &txt) | StochHMM::model | inline |
| setDate(std::string &txt) | StochHMM::model | inline |
| setDesc(std::string &txt) | StochHMM::model | inline |
| setEnd(state *st) | StochHMM::model | inline |
| setInit(state *st) | StochHMM::model | inline |
| setLowerRange(float &value) | StochHMM::model | inline |
| setName(std::string &txt) | StochHMM::model | inline |
| setNumericalAttrib(float value) | StochHMM::model | inline |
| setUpperRange(float &value) | StochHMM::model | inline |
| state_size() | StochHMM::model | inline |
| stateByName | StochHMM::model | private |
| states | StochHMM::model | private |
| stringify() | StochHMM::model | |
| templatedStates | StochHMM::model | private |
| track_size() | StochHMM::model | inline |
| trcks | StochHMM::model | private |
1.8.1