This is the complete list of members for StochHMM::sequence, including all inherited members.
| _digitize() | StochHMM::sequence | private |
| attrib | StochHMM::sequence | private |
| clear() | StochHMM::sequence | |
| complement() | StochHMM::sequence | |
| digitize() | StochHMM::sequence | |
| exDefDefined() | StochHMM::sequence | inline |
| external | StochHMM::sequence | private |
| get_index(size_t position, int order, std::pair< Index, Index > &word_index) | StochHMM::sequence | |
| getAttrib() | StochHMM::sequence | inline |
| getDigitalSeq() | StochHMM::sequence | inline |
| getExDef() | StochHMM::sequence | inline |
| getFasta(std::ifstream &file) | StochHMM::sequence | inline |
| getFasta(std::ifstream &file, track *trk) | StochHMM::sequence | inline |
| getFasta(std::ifstream &, track *, stateInfo *) | StochHMM::sequence | |
| getFastq(std::ifstream &, track *) | StochHMM::sequence | |
| getHeader() | StochHMM::sequence | inline |
| getLength() | StochHMM::sequence | inline |
| getMask(size_t) | StochHMM::sequence | |
| getMaskedFasta(std::ifstream &, track *) | StochHMM::sequence | |
| getMaxMask() | StochHMM::sequence | inline |
| getReal(std::ifstream &file) | StochHMM::sequence | inline |
| getReal(std::ifstream &file, track *trk) | StochHMM::sequence | inline |
| getReal(std::ifstream &, track *, stateInfo *) | StochHMM::sequence | |
| getSymbol(size_t) const | StochHMM::sequence | |
| getTrack() | StochHMM::sequence | inline |
| getUndigitized() | StochHMM::sequence | inline |
| header | StochHMM::sequence | private |
| length | StochHMM::sequence | private |
| mask | StochHMM::sequence | private |
| max_mask | StochHMM::sequence | private |
| operator=(const sequence &) | StochHMM::sequence | |
| operator[](size_t index) | StochHMM::sequence | inline |
| print() | StochHMM::sequence | inline |
| real | StochHMM::sequence | private |
| realSeq | StochHMM::sequence | private |
| realValue(size_t) | StochHMM::sequence | |
| reverse() | StochHMM::sequence | |
| reverseComplement() | StochHMM::sequence | |
| seq | StochHMM::sequence | private |
| seqtrk | StochHMM::sequence | private |
| sequence() | StochHMM::sequence | |
| sequence(bool) | StochHMM::sequence | |
| sequence(std::vector< double > *, track *) | StochHMM::sequence | |
| sequence(std::string &, track *) | StochHMM::sequence | |
| sequence(char *, track *) | StochHMM::sequence | |
| sequence(const sequence &) | StochHMM::sequence | |
| sequences class | StochHMM::sequence | friend |
| sequenceStream class | StochHMM::sequence | friend |
| seqValue(size_t) | StochHMM::sequence | |
| setAttrib(double attr) | StochHMM::sequence | inline |
| setHeader(std::string &head) | StochHMM::sequence | inline |
| setRealSeq(std::vector< double > *, track *) | StochHMM::sequence | |
| setSeq(std::string &, track *) | StochHMM::sequence | |
| setTrack(track *tr) | StochHMM::sequence | inline |
| shuffle() | StochHMM::sequence | |
| size() | StochHMM::sequence | inline |
| stringify() | StochHMM::sequence | |
| undigitize() | StochHMM::sequence | |
| undigitized | StochHMM::sequence | private |
| ~sequence() | StochHMM::sequence | |
1.8.1