This is the complete list of members for StochHMM::state, including all inherited members.
| _finalizeTransitions(std::map< std::string, state * > &state_index) | StochHMM::state | |
| _parseEmission(std::string &, stringList &, tracks &, weights *, StateFuncs *) | StochHMM::state | private |
| _parseHeader(std::string &) | StochHMM::state | private |
| _parseTransition(std::string &, stringList &, tracks &, weights *, StateFuncs *) | StochHMM::state | private |
| addEmission(emm *em) | StochHMM::state | inline |
| addFromState(state *st) | StochHMM::state | inline |
| addToState(state *st) | StochHMM::state | inline |
| addTransition(transition *trans) | StochHMM::state | inline |
| checkLabels(std::set< std::string > &, std::set< std::string > &, std::set< std::string > &) | StochHMM::state | |
| emission | StochHMM::state | private |
| endi | StochHMM::state | private |
| from | StochHMM::state | private |
| get_emission_prob(sequences &seqs, size_t iter) | StochHMM::state | |
| get_transition_prob(sequences &seqs, size_t to, size_t iter) | StochHMM::state | |
| getEmission(size_t iter) | StochHMM::state | inline |
| getEnding() | StochHMM::state | inline |
| getEndTrans() | StochHMM::state | |
| getFrom() | StochHMM::state | inline |
| getGFF() | StochHMM::state | inline |
| getIterator() | StochHMM::state | inline |
| getLabel() | StochHMM::state | inline |
| getName() | StochHMM::state | inline |
| getTo() | StochHMM::state | inline |
| getTrans(size_t iter) | StochHMM::state | inline |
| getTransitions() | StochHMM::state | inline |
| gff | StochHMM::state | private |
| hasComplexEmission() | StochHMM::state | |
| hasComplexTransition() | StochHMM::state | |
| hasSimpleEmission() | StochHMM::state | |
| hasSimpleTransition() | StochHMM::state | |
| isSimple() | StochHMM::state | |
| label | StochHMM::state | private |
| model class | StochHMM::state | friend |
| name | StochHMM::state | private |
| parse(std::string &, stringList &, tracks &, weights *, StateFuncs *) | StochHMM::state | |
| print() | StochHMM::state | |
| setEndingTransition(transition *trans) | StochHMM::state | inline |
| setGFF(std::string &txt) | StochHMM::state | inline |
| setIter(size_t val) | StochHMM::state | inline |
| setLabel(std::string &txt) | StochHMM::state | inline |
| setName(std::string &txt) | StochHMM::state | inline |
| state() | StochHMM::state | |
| state(std::string &, stringList &, tracks &, weights *, StateFuncs *) | StochHMM::state | |
| stateIterator | StochHMM::state | private |
| stringify() | StochHMM::state | |
| to | StochHMM::state | private |
| transi | StochHMM::state | private |
| ~state() | StochHMM::state | |
1.8.1