StochHMM::track Member List

This is the complete list of members for StochHMM::track, including all inherited members.

_splitAmbiguousList(std::vector< std::pair< std::string, std::vector< std::string > > > &, const std::string &)	StochHMM::track	private
addAlphabetChar(std::string &)	StochHMM::track
addAlphabetChar(const char *)	StochHMM::track
addAlphabetChar(std::vector< std::string > &)	StochHMM::track
addAlphabetChar(size_t chSize, const char *characters[])	StochHMM::track
addAlphabetChar(std::string &character, std::string &complement)	StochHMM::track
addAlphabetChar(size_t chSize, const char *characters[], const char *complements[])	StochHMM::track
addAlphabetChar(std::vector< std::string > &characters, std::vector< std::string > &complements)	StochHMM::track
addAmbiguous(std::string &, std::vector< std::string > &)	StochHMM::track
addComplement(std::string &, std::string &)	StochHMM::track
addComplement(const char *, const char *)	StochHMM::track
addComplement(std::vector< std::string > &characters, std::vector< std::string > &complements)	StochHMM::track
alpha_type	StochHMM::track	private
alphabet	StochHMM::track	private
ambiguous	StochHMM::track	private
ambiguousSymbols	StochHMM::track	private
charIndices	StochHMM::track	private
complementAlphabet	StochHMM::track	private
complementSet	StochHMM::track	private
convertIndexToDigital(size_t, size_t, uint8_t *)	StochHMM::track
convertIndexToWord(size_t, size_t)	StochHMM::track
defaultAmbiguous	StochHMM::track	private
description	StochHMM::track	private
getAlpha(int)	StochHMM::track
getAlpha(size_t)	StochHMM::track
getAlphaMax()	StochHMM::track	inline
getAlphaSize()	StochHMM::track	inline
getAlphaType()	StochHMM::track	inline
getAmbiguousCharacter(size_t)	StochHMM::track
getAmbiguousSet(uint8_t val)	StochHMM::track	inline
getAmbiguousSize()	StochHMM::track	inline
getComplementIndex(uint8_t val)	StochHMM::track
getComplementIndex(std::string &)	StochHMM::track
getComplementSymbol(std::string &character)	StochHMM::track
getComplementSymbol(uint8_t value)	StochHMM::track
getDescription()	StochHMM::track	inline
getIndex()	StochHMM::track	inline
getMaxAmbiguous()	StochHMM::track	inline
getMaxUnambiguous()	StochHMM::track	inline
getName()	StochHMM::track	inline
getTotalAlphabetSize()	StochHMM::track	inline
getTrackFunction()	StochHMM::track	inline
getTrackToUse()	StochHMM::track	inline
getUnambiguousSet()	StochHMM::track	inline
isAlpha()	StochHMM::track	inline
isAmbiguousSet()	StochHMM::track	inline
isComplementDefined()	StochHMM::track	inline
isTrackFuncDefined()	StochHMM::track	inline
max_ambiguous	StochHMM::track	private
max_unambiguous	StochHMM::track	private
maxSize	StochHMM::track	private
model class	StochHMM::track	friend
name	StochHMM::track	private
parse(std::string &)	StochHMM::track
parseAmbiguous(std::string &)	StochHMM::track
print()	StochHMM::track	inline
setAlphaType(trackType typ)	StochHMM::track	inline
setAmbiguous()	StochHMM::track	inline
setDescription(std::string &desc)	StochHMM::track	inline
setIndex(size_t indx)	StochHMM::track	inline
setName(std::string &nm)	StochHMM::track	inline
state class	StochHMM::track	friend
stringify()	StochHMM::track
stringifyAmbig()	StochHMM::track
symbolIndex(const std::string &)	StochHMM::track
symbolIndex(unsigned char)	StochHMM::track
symbolIndices	StochHMM::track	private
track()	StochHMM::track
track(TrackFuncs *)	StochHMM::track
track(std::vector< std::string > &)	StochHMM::track
trackFunction	StochHMM::track	private
trackFunctionDefined	StochHMM::track	private
trackIndex	StochHMM::track	private
tracks class	StochHMM::track	friend
trackToUse	StochHMM::track	private
unambiguous	StochHMM::track	private