| evaluate(const std::string *, size_t, const std::string *, size_t) | StochHMM::transitionFuncParam | |
| getCombineName() | StochHMM::transitionFuncParam | inline |
| getCombineType() | StochHMM::transitionFuncParam | inline |
| getTracebackName() | StochHMM::transitionFuncParam | inline |
| getTracebackType() | StochHMM::transitionFuncParam | inline |
| getTrack() | StochHMM::transitionFuncParam | inline |
| getTrackName() | StochHMM::transitionFuncParam | inline |
| isTracebackDefined() | StochHMM::transitionFuncParam | inline |
| parse(stringList &, tracks &, weights *, StateFuncs *) | StochHMM::transitionFuncParam | |
| print() | StochHMM::transitionFuncParam | |
| setTransFunc(std::string &, transitionFunc *, weight *) | StochHMM::transitionFuncParam | |
| setTransTB(tracebackIdentifier, std::string &, combineIdentifier, std::string &) | StochHMM::transitionFuncParam | |
| stringify() | StochHMM::transitionFuncParam | |
| trackName | StochHMM::transitionFuncParam | private |
| transFunc | StochHMM::transitionFuncParam | private |
| transFuncCombineIdentifier | StochHMM::transitionFuncParam | private |
| transFuncCombineString | StochHMM::transitionFuncParam | private |
| transFuncName | StochHMM::transitionFuncParam | private |
| transFuncScaling | StochHMM::transitionFuncParam | private |
| transFuncTraceback | StochHMM::transitionFuncParam | private |
| transFuncTracebackIdentifier | StochHMM::transitionFuncParam | private |
| transFuncTracebackString | StochHMM::transitionFuncParam | private |
| transFuncTrack | StochHMM::transitionFuncParam | private |
| transitionFuncParam() | StochHMM::transitionFuncParam | |