evaluate(const std::string *, size_t, const std::string *, size_t) | StochHMM::transitionFuncParam | |
getCombineName() | StochHMM::transitionFuncParam | inline |
getCombineType() | StochHMM::transitionFuncParam | inline |
getTracebackName() | StochHMM::transitionFuncParam | inline |
getTracebackType() | StochHMM::transitionFuncParam | inline |
getTrack() | StochHMM::transitionFuncParam | inline |
getTrackName() | StochHMM::transitionFuncParam | inline |
isTracebackDefined() | StochHMM::transitionFuncParam | inline |
parse(stringList &, tracks &, weights *, StateFuncs *) | StochHMM::transitionFuncParam | |
print() | StochHMM::transitionFuncParam | |
setTransFunc(std::string &, transitionFunc *, weight *) | StochHMM::transitionFuncParam | |
setTransTB(tracebackIdentifier, std::string &, combineIdentifier, std::string &) | StochHMM::transitionFuncParam | |
stringify() | StochHMM::transitionFuncParam | |
trackName | StochHMM::transitionFuncParam | private |
transFunc | StochHMM::transitionFuncParam | private |
transFuncCombineIdentifier | StochHMM::transitionFuncParam | private |
transFuncCombineString | StochHMM::transitionFuncParam | private |
transFuncName | StochHMM::transitionFuncParam | private |
transFuncScaling | StochHMM::transitionFuncParam | private |
transFuncTraceback | StochHMM::transitionFuncParam | private |
transFuncTracebackIdentifier | StochHMM::transitionFuncParam | private |
transFuncTracebackString | StochHMM::transitionFuncParam | private |
transFuncTrack | StochHMM::transitionFuncParam | private |
transitionFuncParam() | StochHMM::transitionFuncParam | |