trainingSeq Class Reference

#include <trainingSeq.h>

List of all members.

Public Member Functions
	sequence (string &)
bool	next ()
void	reverseComplement ()
int	operator[] (int pos)
bool	importMask ()
int	getMask (int i)
size_t	size ()
string &	getDNA ()
string &	getHeader ()
vector< int8_t > &	getSequence ()
void	setMasked ()
bool	isMasked ()

Private Attributes
std::string	header
queue< int >	seq

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Detailed Description

Definition at line 33 of file trainingSeq.h.

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Member Function Documentation

string& trainingSeq::getDNA ( )

inline

Definition at line 42 of file trainingSeq.h.

{return DNA;};

string& trainingSeq::getHeader ( )

inline

Definition at line 43 of file trainingSeq.h.

{return header;};

int trainingSeq::getMask ( int  i )

inline

Definition at line 40 of file trainingSeq.h.

{return mask[i];};

vector<int8_t>& trainingSeq::getSequence ( )

inline

Definition at line 44 of file trainingSeq.h.

{return seq;};

bool trainingSeq::importMask

(

)

bool trainingSeq::isMasked ( )

inline

Definition at line 46 of file trainingSeq.h.

{return masked;};

bool trainingSeq::next

(

)

int trainingSeq::operator[] ( int  pos )

inline

Definition at line 38 of file trainingSeq.h.

{return seq[pos];};

void trainingSeq::reverseComplement

(

)

trainingSeq::sequence

(

string &

)

void trainingSeq::setMasked ( )

inline

Definition at line 45 of file trainingSeq.h.

{masked=true;};

size_t trainingSeq::size ( void  )

inline

Definition at line 41 of file trainingSeq.h.

{return seq.size();};

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Member Data Documentation

std::string trainingSeq::header

private

Definition at line 46 of file trainingSeq.h.

queue<int> trainingSeq::seq

private

Definition at line 49 of file trainingSeq.h.

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The documentation for this class was generated from the following file:

• trainingSeq.h