- t -

• table : StochHMM::alt_simple_stochTable , StochHMM::multiTraceback
• tables : StochHMM::Counter
• tagFunc : StochHMM::emm
• target : StochHMM::alignment
• tb : StochHMM::nthTrace
• templatedStates : StochHMM::model
• temps : StochHMM::templates
• threshold : StochHMM::matrixPosition
• thresholdSet : StochHMM::matrixPosition
• to : StochHMM::state
• toState : StochHMM::transition
• tr : StochHMM::alignment
• trace_path : StochHMM::traceback_path
• traceback : StochHMM::cell
• traceback_identifier : StochHMM::transition
• traceback_string : StochHMM::transition
• traceback_table : StochHMM::trellis
• track_indices : StochHMM::emm
• trackCount : StochHMM::seqTracks
• trackFunction : StochHMM::track
• trackFunctionDefined : StochHMM::track
• trackFunctions : StochHMM::seqTracks
• trackIndex : StochHMM::track
• trackName : StochHMM::transitionFuncParam , StochHMM::emissionFuncParam
• trackNumber : StochHMM::emissionFuncParam , StochHMM::ppTrack
• trackToUse : StochHMM::ppTrack , StochHMM::track
• TrackToUseForAttrib : StochHMM::seqTracks
• transFunc : StochHMM::transitionFuncParam
• transFuncCombineIdentifier : StochHMM::transitionFuncParam
• transFuncCombineString : StochHMM::transitionFuncParam
• transFuncName : StochHMM::transitionFuncParam
• transFuncScaling : StochHMM::transitionFuncParam
• transFuncTraceback : StochHMM::transitionFuncParam
• transFuncTracebackIdentifier : StochHMM::transitionFuncParam
• transFuncTracebackString : StochHMM::transitionFuncParam
• transFuncTrack : StochHMM::transitionFuncParam
• transi : StochHMM::state
• transition_names : StochHMM::matrixPosition
• transition_type : StochHMM::transition
• transitionFunctions : StochHMM::StateFuncs
• transitions : StochHMM::matrixPosition
• trcks : StochHMM::emm , StochHMM::model , StochHMM::lexicalTable
• trellis : StochHMM::alignment
• trk : StochHMM::PWM
• trks : StochHMM::tracks
• type : StochHMM::trellis , StochHMM::opt_data , StochHMM::Counter , StochHMM::opt_parameters