StochHMM: Class Members

- s -

same_length : StochHMM::sequences
scaling : StochHMM::model , StochHMM::models
score : StochHMM::cell , StochHMM::gff_feature , StochHMM::traceback_path , StochHMM::nthScore
score_tb : StochHMM::nthScore
scores : StochHMM::cell , StochHMM::emm
scoreTable : StochHMM::transition
scoring_current : StochHMM::trellis
scoring_previous : StochHMM::trellis
seq : trainingSeq , StochHMM::sequence , StochHMM::sequences
seq_length : StochHMM::alt_simple_stochTable
seq_size : StochHMM::trellis
seqFilename : StochHMM::seqJob
seqFilenames : StochHMM::seqTracks
seqFiles : trainingSeqs
seqFormat : StochHMM::seqTracks
seqLength : StochHMM::Counter
seqname : StochHMM::gff_feature
seqs : trainingSeqs , StochHMM::trellis
seqTracks : trainingEmission
seqtrk : StochHMM::Counter , StochHMM::sequence
sequencesCounted : StochHMM::Counter
set : StochHMM::seqJob , StochHMM::opt_data
setDefinition : StochHMM::ambigCharacter
simple : StochHMM::PWM
simpleThreshold : StochHMM::PWM
source : StochHMM::gff_feature
st_tb : StochHMM::nthScore
start : StochHMM::gff_feature
start_position : StochHMM::alignment
state_id : StochHMM::stochTable::stoch_value
state_prev : StochHMM::stochTable::stoch_value
state_size : StochHMM::trellis
state_val : StochHMM::stochTable
stateByName : StochHMM::model
stateEmm : trainingSeqs
stateIterator : StochHMM::state
stateIterByGff : StochHMM::stateInfo
stateIterByLabel : StochHMM::stateInfo
stateIterByName : StochHMM::stateInfo
stateMask : trainingSeqs
stateName : StochHMM::transition
states : StochHMM::model , StochHMM::stencil , StochHMM::alt_simple_stochTable
stochastic_table : StochHMM::trellis
store_values : StochHMM::trellis
str : StochHMM::opt_data
strand : StochHMM::gff_feature
subarray_length : StochHMM::simpleTable< T >
subarray_position : StochHMM::lexicalTable
subarray_sequence : StochHMM::lexicalTable
subarray_value : StochHMM::lexicalTable
swap_ptr : StochHMM::trellis
swap_ptr_duration : StochHMM::trellis
symbol : StochHMM::ambigCharacter
symbolIndices : StochHMM::track