- p -

• parity() : StochHMM::dynamic_bitset
• parse() : StochHMM::emm , StochHMM::transitionFuncParam , StochHMM::model , StochHMM::transition , StochHMM::weight , StochHMM::stencil , StochHMM::emissionFuncParam , StochHMM::templates , StochHMM::PWM , StochHMM::emm , StochHMM::ExDefSequence , StochHMM::matrixPosition , StochHMM::state , StochHMM::model , StochHMM::track , StochHMM::transition
• parse_commandline() : StochHMM::options
• parseAmbiguous() : StochHMM::track
• path() : StochHMM::traceback_path , StochHMM::multiTraceback
• pop_back() : StochHMM::sparseArray< T >
• pop_ith() : StochHMM::stringList
• posterior() : StochHMM::trellis
• print() : StochHMM::weights , StochHMM::stencil , StochHMM::templates , StochHMM::PWM , StochHMM::tracks , StochHMM::seqTracks , StochHMM::sequence , StochHMM::sequences , StochHMM::state , StochHMM::stochTable , StochHMM::alt_simple_stochTable , StochHMM::stringList , StochHMM::track , StochHMM::transition , StochHMM::trellis , StochHMM::weight , StochHMM::lexicalTable , StochHMM::emm , StochHMM::transitionFuncParam , StochHMM::emissionFuncParam , StochHMM::ExDefSequence , StochHMM::model
• print_gff() : StochHMM::traceback_path , StochHMM::multiTraceback
• print_hits() : StochHMM::multiTraceback
• print_label() : StochHMM::multiTraceback , StochHMM::traceback_path
• print_path() : StochHMM::multiTraceback , StochHMM::traceback_path
• printAlignment() : StochHMM::alignment
• printFilenames() : StochHMM::seqJob
• printModel() : StochHMM::seqJob
• printSeq() : StochHMM::seqJob
• printTable() : StochHMM::Counter
• printTrellis() : StochHMM::alignment
• processString() : StochHMM::stringList
• push() : StochHMM::alt_simple_stochTable , StochHMM::stochTable
• push_back() : StochHMM::stringList , StochHMM::dynamic_bitset , StochHMM::sparseArray< T > , StochHMM::tracks , StochHMM::traceback_path
• push_ending() : StochHMM::alt_simple_stochTable
• PWM() : StochHMM::PWM