- c -

• calc_pvalue() : StochHMM::alignment
• calcLambda() : StochHMM::alignment
• calculateArrayIndex() : StochHMM::lexicalTable
• calculateBack() : StochHMM::PWM
• calculateIndexFromDecomposed() : StochHMM::lexicalTable
• cell() : StochHMM::cell
• checkBasicModel() : StochHMM::model
• checkExplicitDurationStates() : StochHMM::model
• checkLabels() : StochHMM::state
• CheckParameter() : StochHMM::stencil
• checkTopology() : StochHMM::model
• clear() : StochHMM::simpleTable< T > , StochHMM::sparseArray< T > , StochHMM::stringList , StochHMM::traceback_path , StochHMM::multiTraceback , StochHMM::Counter , StochHMM::dynamic_bitset , StochHMM::sequence
• complement() : StochHMM::sequence
• contains() : StochHMM::stringList
• containsExact() : StochHMM::stringList
• convertIndex() : StochHMM::lexicalTable
• convertIndexToDigital() : StochHMM::track
• convertIndexToWord() : StochHMM::track
• count() : StochHMM::dynamic_bitset , StochHMM::weights
• count_before() : StochHMM::dynamic_bitset
• Counter() : StochHMM::Counter
• countGeneral() : StochHMM::Counter
• countMask() : StochHMM::Counter
• countPeriodic() : StochHMM::Counter
• countPWM() : StochHMM::Counter
• counts() : StochHMM::multiTraceback
• createTable() : StochHMM::lexicalTable