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• import() : StochHMM::model , StochHMM::PWM , StochHMM::model
• importFromString() : StochHMM::model
• importJobs() : StochHMM::seqTracks
• importMask() : trainingSeq , trainingSeqs
• importModels() : StochHMM::models
• incrementCounts() : StochHMM::lexicalTable
• incrementCountsDouble() : StochHMM::lexicalTable
• Index() : StochHMM::Index
• indexOf() : StochHMM::stringList , StochHMM::tracks
• init_array_dimension_values() : StochHMM::lexicalTable
• init_table_dimension_values() : StochHMM::lexicalTable
• initialize_emission_table() : StochHMM::lexicalTable
• initializeTable() : StochHMM::Counter
• insert() : StochHMM::dynamic_bitset , StochHMM::sparseArray< T >
• intersects() : StochHMM::dynamic_bitset
• iopt() : StochHMM::options
• is_open() : trainingSeqs
• isAbsolute() : StochHMM::weight , StochHMM::ExDef , StochHMM::ExDefSequence
• isAlpha() : StochHMM::track
• isAmbiguous() : StochHMM::Index
• isAmbiguousSet() : StochHMM::track
• isBasic() : StochHMM::model
• isComplement() : StochHMM::emm
• isComplementDefined() : StochHMM::track
• isComplex() : StochHMM::emm , StochHMM::transition
• isFlagSet() : StochHMM::options
• isMasked() : trainingSeq
• isReal() : StochHMM::emm
• isSameSize() : StochHMM::sequences
• isSet() : StochHMM::options
• isSimple() : StochHMM::emm , StochHMM::transition , StochHMM::state
• isThresholdSet() : StochHMM::matrixPosition
• isTracebackDefined() : StochHMM::transitionFuncParam
• isTrackDefined() : StochHMM::tracks
• isTrackFuncDefined() : StochHMM::track
• isWeighted() : StochHMM::ExDefSequence