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• addAlphabetChar() : StochHMM::track
• addAmbiguous() : StochHMM::track
• addComplement() : StochHMM::track
• addEmission() : StochHMM::state
• addFromState() : StochHMM::state
• addModel() : StochHMM::models
• addSeq() : StochHMM::sequences
• addState() : StochHMM::model
• addTemplate() : StochHMM::templates
• addToState() : StochHMM::state
• addTrack() : StochHMM::model , StochHMM::lexicalTable
• addTransition() : StochHMM::matrixPosition , StochHMM::state
• addWeight() : StochHMM::weights
• align() : StochHMM::alignment
• alignment() : StochHMM::alignment
• alt_simple_stochTable() : StochHMM::alt_simple_stochTable
• ambigCharacter() : StochHMM::ambigCharacter
• any() : StochHMM::dynamic_bitset
• assign() : StochHMM::simpleTable< T > , StochHMM::nthTrace , StochHMM::multiTraceback
• assignEmissionFunction() : StochHMM::StateFuncs
• assignFunction() : StochHMM::TrackFuncs
• assignMultivariatePdfFunction() : StochHMM::StateFuncs
• assignPDFFunction() : StochHMM::StateFuncs
• assignTable() : StochHMM::lexicalTable
• assignTransitionFunction() : StochHMM::StateFuncs
• assignWeight() : StochHMM::weightDef , StochHMM::ExDef
• at() : StochHMM::dynamic_bitset , StochHMM::sparseArray< T >